BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB006H12SP1|AL425611
(676 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1222 0.0
>3x_Contig1776
Length = 26138
Score = 1222 bits (602), Expect = 0.0
Identities = 646/675 (95%)
Strand = Plus / Minus
Query: 1 tcttgagtgaaaaatwagccgggacaagttatactggttcctcggagacttcagagttga 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23139 tcttgagtgaaaaattagccgggacaagttatactggttcctcggagacttcagagttga 23080
Query: 61 aacgtatawaccwaagtaccaacgaagaaattgcctatwcaatcaaaaagctttggacgc 120
|||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 23079 aacgtatagaccaaagtaccaacgaagaaattgcctatgcaatcaaaaagctttggacgc 23020
Query: 121 aggacaaggggatcagacaatgtttcaataggtcaagtgaatttcaattggmaggmtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 23019 aggacaaggggatcagacaatgtttcaataggtcaagtgaatttcaattggaaggatctg 22960
Query: 181 catcgtattattttgataacattgaaaaattcgctcgagttgattatgtttgtgatgaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22959 catcgtattattttgataacattgaaaaattcgctcgagttgattatgtttgtgatgaca 22900
Query: 241 tggacattttgamaggmagaattaagaccactgggatcaccgaaaacagtttcaagattg 300
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22899 tggacattttgaaaggaagaattaagaccactgggatcaccgaaaacagtttcaagattg 22840
Query: 301 gmccaagcacgttcaaagtttacgatgctgggggacaacgaagcgagagamgammatggm 360
| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 22839 gaccaagcacgttcaaagtttacgatgctgggggacaacgaagcgagagaagaaaatgga 22780
Query: 361 tccmttgtttcgaaggtattactgctgtggtatttgtcatagcaattagtgaatatgatc 420
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 22779 tccattgtttcgaaggtattactgctgtggtatttgtaatagcaattagtgaatatgatc 22720
Query: 421 mamtgtyattcgaagatgamagggtgaaccgtatgcacgamtcgatagtattatymgmya 480
| ||| |||||||||||| |||||||||||||||||||| ||||||||||||| | |
Sbjct: 22719 aaatgttattcgaagatgaaagggtgaaccgtatgcacgaatcgatagtattattagata 22660
Query: 481 cactattgacttctagatggtttgccaacacacctttcatactattcttcaaccaagtag 540
||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 22659 cactattgaattctagatggtttgccaacacacctttcatactattcttaaacaaagtag 22600
Query: 541 ntattttccaagacaaggtgaagagatctccaatcagaacatggttccccaattatccag 600
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22599 atattttccaagaaaaggtgaagagatctccaatcagaacatggttccccaattatccag 22540
Query: 601 ggaaactgggtgatagcgagactggactgaaatatttcgaatcattattcttaagcttga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22539 ggaaactgggtgatagcgagactggactgaaatatttcgaatcattattcttaagcttga 22480
Query: 661 acagaagtaacaagc 675
|||||||||||||||
Sbjct: 22479 acagaagtaacaagc 22465
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.716 1.33
Gapped
Lambda K H
1.41 0.716 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3981
Number of Sequences: 1807
Number of extensions: 3981
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 676
length of database: 10,358,551
effective HSP length: 16
effective length of query: 660
effective length of database: 10,329,639
effective search space: 6817561740
effective search space used: 6817561740
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.4 bits)
S1: 12 (24.8 bits)
S2: 49 (100.0 bits)